code templates for the peptizer manual:

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%HINT%
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\begin{center}
	\fbox{
        	 \begin{minipage}[t]{1.0\textwidth}
	            \textsc{Hint}\\A short tooltip describing an Agent's logic can be shown by \textit{holding} the mouse on it's name cell.
        	 \end{minipage}
         }
\end{center}


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%LABELED FIGURE INDEX%
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\renewcommand{\labelenumi}{\Alph{enumi}.}
\begin{enumerate}
	\item Defining the data source.\\\textit{Which peptide identifications do you want to use?}
	\item Activating and customizing Agent's.\\\textit{What rules do the peptide identifications have to fit?}
	\item Selecting and customizing the AgentAggregator.\\\textit{How should the Agent votes be aggregated to judge a peptide identification?}
	\item Defining the Mascot confidence.\\\textit{When do you consider a peptide as confident?}
	\item Storing, clearing or loading a Peptizer configuration.\textit{What pre-defined configuration do you want to use?}
	\item Starting the task.
\end{enumerate}


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%FIGURE%
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\begin{figure}[h]
\begin{center}
	\includegraphics[width=.85\textwidth]{filename}
	\caption{\label{label_name}figure text}
\end{center}
\end{figure}


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%DESCRIPTION%
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\begin{description}
	\item[bold_head] text
\end{description}
%


%
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%CODE%
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\begin{algorithm}[t!]
\caption{Agent signature in a code outline}
\scriptsize
\vspace{0.3cm}
\begin{verbatim}
%%% 3 x spaces code indent!
\end{verbatim}
\end{algorithm}
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